YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PMP22_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSPPKKTT LQRYLSQLQQ HPLRTKAITA GVLSGVSDVV SQKLSGIQKI QLRRVLLKVI  60
   61 FAGGFLGPAG HFFHTYLDKF FKGKKDTQTV AKKVILEQLT LSPLNHLLFM IYYGVVIERT 120
  121 PWTLVRERIK KTYPTVQLTA WTFFPVVGWI NYKYVPLHFR VILHSLVAFF WGIFLTLRAR 180
  181 SMTLALAKAK

Type	Start	End	Confidence
Cytoplasmic	1	54	0.95
Transmembrane Helix	55	74	0.92
Non-Cytoplasmic	75	102	0.84
Transmembrane Helix	103	117	0.81
Cytoplasmic	118	132	0.69
Transmembrane Helix	133	152	0.84
Non-Cytoplasmic	153	159	0.72
Transmembrane Helix	160	179	0.91
Cytoplasmic	180	190	0.91