YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HA22B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGIGSLVK VIFKNFDVIA GPVISLVYPL YASVRAIESR SHGDDKQWLT YWALYSLIKL  60
   61 FELTFFRLLE WIPLYPYAKL ALTSWLVLPG MNGAAYLYEH YVRSFLLSPH TVNVWYVPAK 120
  121 KDDDLGATAG KFTPVNDSGA PQEKIVSSVD TSAKYVGHSA FDDAYIY

Type	Start	End	Confidence
Cytoplasmic	1	11	0.60
Transmembrane Helix	12	32	0.66
Non-Cytoplasmic	33	47	0.57
Transmembrane Helix	48	69	0.61
Cytoplasmic	70	76	0.39
Transmembrane Helix	77	98	0.66
Non-Cytoplasmic	99	167	0.54