YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30693281, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGILNKLRN LDAYPKINED FYSRTLSGGV ITLLSSVVMF LLFFSELRLY LHTVTETKLI  60
   61 VDTSRGETLR INFDITFPAL ACSILSVDAM DISGELHLDV KHDIIKRRLD SNGNTIEARQ 120
  121 DGIGATKIEN PLQKHGGRLG HNETYCGSCY GAEAEEHDCC NSCEDVREAY RKKGWGVTNP 180
  181 DLIDQCKREG FLQRVKDEEG EGCNIYGFLE VNKVAGNFHF APGKSFHQSG VHVHDLLAFQ 240
  241 KDSFNISHKI NRLTYGDYFP GVVNPLDKVE WSQDTPNAMY QYFIKVVPTV YTDIRGHTIQ 300
  301 SNQFSVTEHV KSSEAGQLQS LPGVFFFYDL SPIKVTFTEE HISFLHFLTN VCAIVGGVFT 360
  361 VSGIIDAFIY HGQKAIKKKM EIGKFS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.92
Non-Cytoplasmic	44	346	0.97
Transmembrane Helix	347	370	0.87
Cytoplasmic	371	386	0.90