YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SDIR1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFVFRGSRG DLESGFSGGF LPERRAMRVH GARPVNSNSL AFLVTVLLLF MILNSHQMPP  60
   61 NFLLWLVLGV FLMATTLRMY ATCQQLQAHA QAQAAAASGL FSHTELRLHV PPSIALATRG 120
  121 RLQGLRLQLA LLDREFDDLD YETLRALDSD NVSTTSMSEE EINALPVHKY KVLDPENGCS 180
  181 LAKQASTSSS AEKMLDSANE SKKGTEDELT CSVCLEQVTV GEIVRTLPCL HQFHAGCIDP 240
  241 WLRQQGTCPV CKFRAHSGWQ EQDEIDDDAS DMV

Type	Start	End	Confidence
Cytoplasmic	1	33	0.96
Transmembrane Helix	34	53	0.95
Non-Cytoplasmic	54	61	0.79
Transmembrane Helix	62	81	0.95
Cytoplasmic	82	273	0.93