YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PXG2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSMERMERD AMETVAPYAR VTYHRRVRGD LDDTLPKPYL PRALQAPDME HPQGTPDHRH  60
   61 NGLSVLQQHV AFFDLDNNGI IYPFETFSGF RLLGFNLLAS LILAAGINIA LSYATLPGWL 120
  121 PSPFFPIYIH NIHKAKHGSD SKTYDNEGRY TPANLELMFS KYARTIPDKL SLGELWDMTE 180
  181 GNRDAFDFFG WLASKVEWGV LYALASDEEG FLSKEAIRRC FDGSLFEYCA KNYAEIKEYK 240
  241 TYY

Type	Start	End	Confidence
Cytoplasmic	1	92	0.90
Transmembrane Helix	93	116	0.86
Non-Cytoplasmic	117	243	0.87