YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX51_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.97
Transmembrane Helix	60	79	0.91
Non-Cytoplasmic	80	94	0.79
Transmembrane Helix	95	117	0.88
Cytoplasmic	118	135	0.89
Transmembrane Helix	136	157	0.92
Non-Cytoplasmic	158	174	0.87
Transmembrane Helix	175	194	0.79
Cytoplasmic	195	203	0.69
Transmembrane Helix	204	226	0.84
Non-Cytoplasmic	227	237	0.64
Transmembrane Helix	238	259	0.92
Cytoplasmic	260	278	0.78
Transmembrane Helix	279	299	0.86
Non-Cytoplasmic	300	315	0.79
Transmembrane Helix	316	340	0.80
Cytoplasmic	341	357	0.80
Transmembrane Helix	358	379	0.94
Non-Cytoplasmic	380	397	0.81
Transmembrane Helix	398	420	0.73
Cytoplasmic	421	434	0.76
Transmembrane Helix	435	457	0.87
Non-Cytoplasmic	458	461	0.80
Transmembrane Helix	462	483	0.89
Cytoplasmic	484	532	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCNPSTTTTT TGSENQESRT GLFLDLFSIN SFEPTKRNLR HCENRGSPLM AEAVTEAKSL  60
   61 FTLAFPIAVT ALVLYLRSAV SMFFLGQLGD LELAAGSLAI AFANITGYSV LSGLALGMEP 120
  121 LCSQAFGAHR FKLLSLTLHR TVVFLLVCCV PISVLWFNVG KISVYLHQDP DIAKLAQTYL 180
  181 IFSLPDLLTN TLLHPIRIYL RAQGIIHPVT LASLSGAVFH LPANLFLVSY LRLGLTGVAV 240
  241 ASSITNIFVV AFLVCYVWAS GLHAPTWTDP TRDCFRGWAP LLRLAGPSCV SVCLEWWWYE 300
  301 IMIVLCGLLV NPRSTVAAMG VLIQTTSFLY VFPSSLSFAV STRVGNELGA NRPKTAKLTA 360
  361 TVAIVFAAVT GIIAAAFAYS VRNAWGRIFT GDKEILQLTA AALPILGLCE IGNCPQTVGC 420
  421 GVVRGTARPS TAANVNLGAF YLVGMPVAVG LGFWAGIGFN GLWVGLLAAQ ISCAGLMMYV 480
  481 VGTTDWESEA KKAQTLTCAE TVENDIIKAV VASTIDGECD EAEPLIRITV LY