YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL48_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVEPDMED LFQEKKRVRN PLVPLGALMT AGVLTAGLIS FRRGNSQLGQ VLMRARVVVQ  60
   61 GATVALMVGT GYYYGDNPWK KLLLSEIHET EALSPKSSSA ATLTLMNQKD PSSSSIVSVL 120
  121 CLVISGLALI IVFLGVLYLI FKFLRKSSTL FPIPHFNYNP DLFSFSSPQL QHLFFLHDSG 180
  181 LDQTAIDALP VFLYGNVTIS LEQPFDCAVC LNEFSDTDKL RLLPVCSHAF HLHCIDTWLL 240
  241 SNSTCPLCRR SLSTSNVCYN HSETLVAPLS GHQQVDDGKA SLAKRVFSVR LGRFKSTNES 300
  301 QSQRHDVKDE IGVRMPRRCY SMGTQQYLVC DQDFVVALSS SPREGNIGR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.70
Transmembrane Helix	21	41	0.91
Non-Cytoplasmic	42	54	0.60
Transmembrane Helix	55	75	0.82
Cytoplasmic	76	115	0.61
Transmembrane Helix	116	141	0.90
Non-Cytoplasmic	142	349	0.62