YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15232249, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSAIQHSS FAGQTTLKPS NDLLRKIGAS NGGGRIIMRR TVKSTPQSIW YGPDRPKYLG  60
   61 PFSENTPSYL TGEYPGDYGW DTAGLSADPE TFAKNRELEV IHSRWAMLGA LGCTFPEILS 120
  121 KNGVKFGEAV WFKAGSQIFS EGGLDYLGNP NLIHAQSILA IWACQVVLMG FIEGYRIGGG 180
  181 PLGEGLDPLY PGGAFDPLNL AEDPEAFSEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPI 240
  241 ENLFDHIADP VANNAWAYAT NFVPGK

Type	Start	End	Confidence
Cytoplasmic	1	100	0.61
Transmembrane Helix	101	119	0.41
Non-Cytoplasmic	120	151	0.79
Transmembrane Helix	152	172	0.50
Cytoplasmic	173	219	0.60
Transmembrane Helix	220	235	0.47
Non-Cytoplasmic	236	266	0.76