YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PCR8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVTTPSEE DSNNGLPVQQ PGTPNQRTRV PVSQFAPPNY QQANVNLSVG RPWSTGLFDC  60
   61 QADQANAVLT TIVPCVTFGQ IAEVMDEGEM TCPLGTFMYL LMMPALCSHW VMGSKYREKM 120
  121 RRKFNLVEAP YSDCASHVLC PCCSLCQEYR ELKIRNLDPS LGWNGILAQG QGQYEREAPS 180
  181 FAPTNQYMSK

Type	Start	End	Confidence
Cytoplasmic	1	64	0.54
Transmembrane Helix	65	82	0.49
Non-Cytoplasmic	83	93	0.79
Transmembrane Helix	94	113	0.83
Cytoplasmic	114	190	0.82