YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	4CLL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV  60
   61 RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS AGGVFSGANP TALVSEIKKQ 120
  121 VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ 180
  181 TDLCALPFSS GTTGLQKGVM LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV 240
  241 GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL 300
  301 KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV 360
  361 GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF MNKEETDKTI DEQGWLHTGD 420
  421 IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA 480
  481 ACVVINPKAT EKEEDILNFV AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN 540
  541 KK

Type	Start	End	Confidence
Cytoplasmic	1	82	0.59
Transmembrane Helix	83	101	0.51
Non-Cytoplasmic	102	224	0.86
Transmembrane Helix	225	246	0.70
Cytoplasmic	247	262	0.68
Transmembrane Helix	263	284	0.57
Non-Cytoplasmic	285	542	0.85