YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15239754, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPTTATVDD EPGQIKRALI DASAGAISGG VSRSVTSPLD VIKIRFQVQL EPTTSWGLVR  60
   61 GNLSGASKYT GMVQATKDIF REEGFRGFWR GNVPALLMVM PYTSIQFTVL HKLKSFASGS 120
  121 TKTEDHIHLS PYLSFVSGAL AGCAATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIQ 180
  181 SRGIRGLYNG LTPTLVEIVP YAGLQFGTYD MFKRWMMDWN RYKLSSKIPI NVDTNLSSFQ 240
  241 LFICGLGAGT SAKLVCHPLD VVKKRFQIEG LQRHPRYGAR VERRAYRNML DGLRQIMISE 300
  301 GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESISW

Type	Start	End	Confidence
Cytoplasmic	1	87	0.74
Transmembrane Helix	88	110	0.58
Non-Cytoplasmic	111	130	0.71
Transmembrane Helix	131	152	0.68
Cytoplasmic	153	339	0.49