YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VATO1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVVALGHA SSWGAALVRI SPYTFSAIGI AISIGVSVLG AAWGIYITGS SLIGAAIEAP  60
   61 RITSKNLISV IFCEAVAIYG VIVAIILQTK LESVPSSKMY DAESLRAGYA IFASGIIVGF 120
  121 ANLVCGLCVG IIGSSCALSD AQNSTLFVKI LVIEIFGSAL GLFGVIVGII MSAQATWPTK 180
  181

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.43
Transmembrane Helix	21	47	0.85
Cytoplasmic	48	66	0.45
Transmembrane Helix	67	89	0.91
Non-Cytoplasmic	90	107	0.56
Transmembrane Helix	108	134	0.87
Cytoplasmic	135	149	0.46
Transmembrane Helix	150	173	0.88
Non-Cytoplasmic	174	180	0.50