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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GAGT3_ARATH
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDAIIADPL LAIDHETVAE KKKQSKNLKI SLLLLLILLA TSGYYSFSDN ITTVFLSRQA  60
   61 IDDDHSLSLG TISDVVESEN GVVAADDARC SEIGASVLRS GGHAVDAAVA ITLCVGVVNP 120
  121 MSSGIGGGSF LIVSSQKDSK AEAFDMRETA PLAASKDMYK NDASAKSLGA LSMGVPGEIA 180
  181 GLYEAWKRYG RLPWKPLFEP AIKLARDGFV VYPYLGKAIS TKVAMILKDP GMRSVFSRNG 240
  241 QVLKTGETCY NPELAQSLET ISEQGPGAFY NGTVGEKLVK DVKKAGGIIT MDDLRSYKVR 300
  301 VTDAMSVDVM GYTVHGMPPP SGGTVGFSMV MNILDSYSNL YTASGRELGL HRLIEAMKHM 360
  361 FAARMDLGDP EFVNVTNSMN QMLSKAHAEE IQKRIFDNTT FPPEYYMNRW SQLRDQGTSH 420
  421 FCVVDADRNS VSMTSTVNYR FGAGVLSPST GIVLNNEMDD FSTPTEITPD MLPPAPTNFI 480
  481 EPNKRPLSSM TPLVITKDGE FVAALGGAGG MHIIPAVLQV FLNCFVLNMK PKEAVESARI 540
  541 YHRLIPNVVS YENFTTINGD HIGVSEDTKM FLAERGHELK ELSGGAIVQL IVQSFKEEKE 600
  601 EEMIIEIGRK IGKKSKPLKG LLTAVSDPRK DGKPAAV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle