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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: BAME2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLLLLLLL LLLHISHSFT VAKPITELHA LLSLKSSFTI DEHSPLLTSW NLSTTFCSWT  60
   61 GVTCDVSLRH VTSLDLSGLN LSGTLSSDVA HLPLLQNLSL AANQISGPIP PQISNLYELR 120
  121 HLNLSNNVFN GSFPDELSSG LVNLRVLDLY NNNLTGDLPV SLTNLTQLRH LHLGGNYFSG 180
  181 KIPATYGTWP VLEYLAVSGN ELTGKIPPEI GNLTTLRELY IGYYNAFENG LPPEIGNLSE 240
  241 LVRFDAANCG LTGEIPPEIG KLQKLDTLFL QVNAFTGTIT QELGLISSLK SMDLSNNMFT 300
  301 GEIPTSFSQL KNLTLLNLFR NKLYGAIPEF IGEMPELEVL QLWENNFTGS IPQKLGENGR 360
  361 LVILDLSSNK LTGTLPPNMC SGNRLMTLIT LGNFLFGSIP DSLGKCESLT RIRMGENFLN 420
  421 GSIPKELFGL PKLSQVELQD NYLTGELPIS GGGVSGDLGQ ISLSNNQLSG SLPAAIGNLS 480
  481 GVQKLLLDGN KFSGSIPPEI GRLQQLSKLD FSHNLFSGRI APEISRCKLL TFVDLSRNEL 540
  541 SGDIPNELTG MKILNYLNLS RNHLVGSIPV TIASMQSLTS VDFSYNNLSG LVPSTGQFSY 600
  601 FNYTSFVGNS HLCGPYLGPC GKGTHQSHVK PLSATTKLLL VLGLLFCSMV FAIVAIIKAR 660
  661 SLRNASEAKA WRLTAFQRLD FTCDDVLDSL KEDNIIGKGG AGIVYKGTMP KGDLVAVKRL 720
  721 ATMSHGSSHD HGFNAEIQTL GRIRHRHIVR LLGFCSNHET NLLVYEYMPN GSLGEVLHGK 780
  781 KGGHLHWNTR YKIALEAAKG LCYLHHDCSP LIVHRDVKSN NILLDSNFEA HVADFGLAKF 840
  841 LQDSGTSECM SAIAGSYGYI APEYAYTLKV DEKSDVYSFG VVLLELITGK KPVGEFGDGV 900
  901 DIVQWVRSMT DSNKDCVLKV IDLRLSSVPV HEVTHVFYVA LLCVEEQAVE RPTMREVVQI 960
  961 LTEIPKIPLS KQQAAESDVT EKAPAINESS PDSGSPPDLL SN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle