YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VSR5_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPSNKGTVL ALILALTMVV VNGFSSRFFV EKSSLTVLNS WEMGAKHDAA IANFGLPKYG  60
   61 GFMIGSVVYA GQDAYGCNSF NKTFNTKSPY PKILLIDRGV CNFALKIWNG QQSGAAAVLL 120
  121 ADNIVEPLIT MDTPQDEDPD FIDKVKIPSA LILRSFGDSL KKALKRGEEV ILKMDWSESI 180
  181 PNPDERVEYE LWANTNDECG VHCDKQIDFI KNFKGMAQIL EKGGYTLFRP HYISWVCPKE 240
  241 LLLSKQCRTQ CINQGRYCAL DTKQEFEDGY NGKDVVYENL RQLCVHKVAK EKNTSWVWWD 300
  301 YVTDFNIRCS MKEKKYSREC AETIVESLGL SLEKIKKCIG DPDADVENEV LKAEEAFQLG 360
  361 QENRGIVTIF PTLMINNAQY RGKLERTAVL KAICSGFKER TEPSICLNSD IETNECLIEN 420
  421 GGCWQDKRSN VTACKDTFRG RVCECPVVDG VQYKGDGYTS CKPYGPARCS MNNGDCWSET 480
  481 RKGLTFSSCS DSETSGCRCP LGFLGDGLKC EDIDECKEKS ACKCDGCKCK NNWGGYECKC 540
  541 SNNSIYMKEE DTCIERRSGS RSRGLFTIVV LTAIAGISLG AYIFYKYHLQ SYMDSEIVSI 600
  601 MSQYIPLDSQ SINQDSFK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle