YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28394015, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGYRSSKK TDTICEDVCG QEGSRAGKAI SRLRCVLRGL DFKTFLFLFT LLPLFIFGIY  60
   61 LHGQKITYFL RPLWESPPKP FNILPHYYHE NTSMELLCNL HGWKLRESPR RVFDAALFSN 120
  121 EIDMLTLRWN ELNPYITQFV LLESNSTFTG LSKQLAFADN REKNFKFVEP RLTYGNVGGR 180
  181 FKKGENPFVE ESFQRLALDQ LIKLAGIKED DLLIMSDVDE IPSGHTINLL RWCDGFPPIL 240
  241 HLQLRNYLYS YEYYVDSKSW RASVHLYKPG KTRCAHFRQS NNLLTDSGWH CSFCFRHIND 300
  301 FVFKMKAYSH TDRVRFLHYL NPRRIQDIIC KGTDLFDMLP EEHTFREIIG KLGPIPRSYS 360
  361 AVHLPGYLIQ NADSYKYLLP GNCKRESG

Type	Start	End	Confidence
Cytoplasmic	1	41	0.96
Transmembrane Helix	42	63	0.92
Non-Cytoplasmic	64	388	0.98