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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPL12_ARATH
Protein type: Transmembrane
Type Confidence: 0.67
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEARIEGEVE GHSLEYGFSG KRSVEWDLND WKWNGDLFVA TQLNHGSSNS SSTCSDEGNV  60
   61 EIMERRRIEM EKKKKRRAVT VVAMEEDNLK DDDAHRLTLN LGGNNIEGNG VKKTKLGGGI 120
  121 PSRAICCQVD NCGADLSKVK DYHRRHKVCE IHSKATTALV GGIMQRFCQQ CSRFHVLEEF 180
  181 DEGKRSCRRR LAGHNKRRRK ANPDTIGNGT SMSDDQTSNY MLITLLKILS NIHSNQSDQT 240
  241 GDQDLLSHLL KSLVSQAGEH IGRNLVGLLQ GGGGLQASQN IGNLSALLSL EQAPREDIKH 300
  301 HSVSETPWQE VYANSAQERV APDRSEKQVK VNDFDLNDIY IDSDDTTDIE RSSPPPTNPA 360
  361 TSSLDYHQDS RQSSPPQTSR RNSDSASDQS PSSSSGDAQS RTDRIVFKLF GKEPNDFPVA 420
  421 LRGQILNWLA HTPTDMESYI RPGCIVLTIY LRQDEASWEE LCCDLSFSLR RLLDLSDDPL 480
  481 WTDGWLYLRV QNQLAFAFNG QVVLDTSLPL RSHDYSQIIT VRPLAVTKKA QFTVKGINLR 540
  541 RPGTRLLCTV EGTHLVQEAT QGGMEERDDL KENNEIDFVN FSCEMPIASG RGFMEIEDQG 600
  601 GLSSSFFPFI VSEDEDICSE IRRLESTLEF TGTDSAMQAM DFIHEIGWLL HRSELKSRLA 660
  661 ASDHNPEDLF SLIRFKFLIE FSMDREWCCV MKKLLNILFE EGTVDPSPDA ALSELCLLHR 720
  721 AVRKNSKPMV EMLLRFSPKK KNQTLAGLFR PDAAGPGGLT PLHIAAGKDG SEDVLDALTE 780
  781 DPGMTGIQAW KNSRDNTGFT PEDYARLRGH FSYIHLVQRK LSRKPIAKEH VVVNIPESFN 840
  841 IEHKQEKRSP MDSSSLEITQ INQCKLCDHK RVFVTTHHKS VAYRPAMLSM VAIAAVCVCV 900
  901 ALLFKSCPEV LYVFQPFRWE LLEYGTS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle