YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PR1F2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR  60
   61 IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF WIFLYFLRDE PLVVFGYQID 120
  121 DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA 180
  181 SGLMSYPSS

Type	Start	End	Confidence
Cytoplasmic	1	66	0.94
Transmembrane Helix	67	85	0.76
Non-Cytoplasmic	86	88	0.48
Transmembrane Helix	89	107	0.86
Cytoplasmic	108	122	0.54
Transmembrane Helix	123	141	0.74
Non-Cytoplasmic	142	144	0.41
Transmembrane Helix	145	162	0.72
Cytoplasmic	163	189	0.70