YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCP51_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTTVVYLVI LCLIVSCTNG ETKHVRKINS DGSEAWGYVE VRPKAHMFWW HYKSPYRVEN  60
   61 PSKPWPIILW LQGGPGASGV GIGNFQEVGP LDTFLKPRNS TWLKKADLLF VDSPVGAGYS 120
  121 FVEGNQKDLY VKSDEEAAQD LTKLLQQLFN KNQTLNQSPL FIVAESYGGK IAVKLGLSVI 180
  181 DAVQSGKLKL HLGGVILGDS WISPEDFVFS WGPLLKHVSR LDDNGLDSSN SLAEKIKTQI 240
  241 KNGEYVGATQ TWMDLENLIS SKSNFVDFYN FLLDTGMDPV SLTTSLKIKK EEKIKKYSRY 300
  301 LNDMRSLSDV EDVEGDLDKL MNGVIKKKLK IIPNDLIWGN NSDDVFTAME AAFMKPVIED 360
  361 VDELLATGVD VTIYNGQLDV ICSTSGTEAW VHKLRWEGLE EFKKMEREPL FCESDRATRG 420
  421 FTKSYKNLHF YWILGAGHFV PVDEPCVALK MVGEITKSPQ L

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	461	0.99