YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TI173_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTKKKSKEH GLYRIVNAIG YAFGAGAVGG SVYHFVRGAY NSPIGARYVG GTQAASMNAP  60
   61 RLGGTFAVFG GLLSTFDYAL VRIRKKEDPW NSIVAGAATG GVLSIRKGVV AASTSAVMFG 120
  121 FFLAVLNPPF GSK

Type	Start	End	Confidence
Cytoplasmic	1	12	0.94
Transmembrane Helix	13	36	0.88
Non-Cytoplasmic	37	61	0.90
Transmembrane Helix	62	81	0.92
Cytoplasmic	82	102	0.84
Transmembrane Helix	103	126	0.81
Non-Cytoplasmic	127	133	0.72