YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RBL2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI  60
   61 TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE WRKVVHEHQG WRLLSCMWLH 120
  121 AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL 180
  181 FGLLGAMLSE LLTNWTIYAN KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG 240
  241 FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH 300
  301 CKWCHYLSCF PTSKWTC

Type	Start	End	Confidence
Cytoplasmic	1	30	0.86
Transmembrane Helix	31	53	0.89
Non-Cytoplasmic	54	116	0.87
Transmembrane Helix	117	138	0.90
Cytoplasmic	139	144	0.80
Transmembrane Helix	145	167	0.86
Non-Cytoplasmic	168	173	0.66
Transmembrane Helix	174	193	0.90
Cytoplasmic	194	201	0.67
Transmembrane Helix	202	221	0.92
Non-Cytoplasmic	222	226	0.83
Transmembrane Helix	227	249	0.88
Cytoplasmic	250	267	0.90
Transmembrane Helix	268	290	0.92
Non-Cytoplasmic	291	317	0.93