YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15238520, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNEDSNSN GLDSFDAVKQ RFKDRSKKVV QTRELLSKQA VQTREILSKQ AVKIAKQAEE  60
   61 HERFINKVTH LVGVLGFGGF CFLLGARPQD IPLVYCFFYV IFVPLRWIYY RFKKWHYYLL 120
  121 DFCYYANTIF LVDLLLYPKN EKLFMVCFSF AEGPLAWAII VWRCSLVFSS PDKIVSVLIH 180
  181 LLPGLVFFTI RWWNPATFAA MHPVGTDRRV SWPYVEDKAY LFTWLFLVPL VVYTLWQVLY 240
  241 FLIVNVLRRQ RLLRDPEVMT SYRELSKKAE KANNKLWQLS GLLGDQNRIW MYILFQAIFT 300
  301 VATMALTVPI FLSYRLHVIF QILKISAAVW NGGSFLLEVM PRQVIQKEKK KKAEMQPIEE 360
  361 QILHHEAVSH PTENEPKSTE T

Type	Start	End	Confidence
Cytoplasmic	1	63	0.99
Transmembrane Helix	64	86	0.87
Non-Cytoplasmic	87	90	0.93
Transmembrane Helix	91	110	0.94
Cytoplasmic	111	116	0.93
Transmembrane Helix	117	137	0.91
Non-Cytoplasmic	138	143	0.84
Transmembrane Helix	144	166	0.88
Cytoplasmic	167	173	0.91
Transmembrane Helix	174	193	0.93
Non-Cytoplasmic	194	220	0.93
Transmembrane Helix	221	244	0.93
Cytoplasmic	245	288	0.98
Transmembrane Helix	289	312	0.89
Non-Cytoplasmic	313	319	0.76
Transmembrane Helix	320	340	0.75
Cytoplasmic	341	381	0.82