YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APX5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVNVDAEYL KEIEKTRRDL RALISSRNCA PIMLRLAWHD AGTYDAKKKT GGANGSIRFK  60
   61 EELNRPHNKG LEKAVAFCEE VKAKHPRVSY ADLYQLAGVV AVEVTGGPAI PFTPGRKDAD 120
  121 SADDGELPNP NEGASHLRTL FSRMGLLDRD IVALSGGHTL GRAHKERSDF EGPWTQDPLK 180
  181 FDNSYFVELL KGETPGLLQL KTDKALLDDP KFHPFVKLYA KDEDMFFKAY AISHKKLSEL 240
  241 GFNPPRRIPS AVTQQTLGIA VAAAVVIFTI CYEASRRGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	251	0.96
Transmembrane Helix	252	272	0.86
Cytoplasmic	273	279	0.76