YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL23_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.51
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYTRISPAL VPSLSPTAAA ESSGGGTMIA TVFMALLLPC VGMCIVFLIY LFLLWCSTRR  60
   61 RIERLRFAEP VKPVTGKGLS VLELEKIPKL TGRELAVIAR STECAVCLED IESGQSTRLV 120
  121 PGCNHGFHQL CADTWLSNHT VCPVCRAELA PNLPQCNENQ SPC

Type	Start	End	Confidence
Signal Peptide	1	20	0.51
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	32	0.82
Transmembrane Helix	33	56	0.92
Cytoplasmic	57	163	0.97