YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.82
Transmembrane Helix	58	78	0.88
Non-Cytoplasmic	79	131	0.69
Transmembrane Helix	132	154	0.88
Cytoplasmic	155	163	0.62
Transmembrane Helix	164	185	0.78
Non-Cytoplasmic	186	193	0.57
Transmembrane Helix	194	210	0.42
Cytoplasmic	211	223	0.64
Transmembrane Helix	224	245	0.81
Non-Cytoplasmic	246	261	0.46
Transmembrane Helix	262	276	0.59
Cytoplasmic	277	277	0.14
Transmembrane Helix	278	292	0.55
Non-Cytoplasmic	293	293	0.34
Transmembrane Helix	294	321	0.79
Cytoplasmic	322	372	0.51
Transmembrane Helix	373	396	0.90
Non-Cytoplasmic	397	430	0.52
Transmembrane Helix	431	451	0.92
Cytoplasmic	452	459	0.45
Transmembrane Helix	460	482	0.91
Non-Cytoplasmic	483	512	0.46
Transmembrane Helix	513	530	0.48
Cytoplasmic	531	545	0.78
Transmembrane Helix	546	568	0.93
Non-Cytoplasmic	569	614	0.72
Transmembrane Helix	615	636	0.88
Cytoplasmic	637	644	0.52
Transmembrane Helix	645	661	0.48
Non-Cytoplasmic	662	665	0.70
Transmembrane Helix	666	684	0.88
Cytoplasmic	685	695	0.82
Transmembrane Helix	696	717	0.95
Non-Cytoplasmic	718	755	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVFDEHKP SDDSHESKIV INGEEEVLEE ENDNPIEEVR LTVPITDDPT LPVLTFRTWT  60
   61 LGLFSCILLA FVNQFFGFRS NQLWVSSVAA QIVTLPLGKL MAKTLPTKKF GFPGTNWSWS 120
  121 FNPGPFNMKE HVLITIFANT GAGGVYATSI ITIVKAFYNR QLNVAAAMLL TQTTQLLGYG 180
  181 WAGIFRKFLV DSPYMWWPSN LVQVSLFRAL HEKEDLQKGQ QTRFRFFIIV FCVSFAYYII 240
  241 PGYLFPSISA ISFVCWIWKS SVTAQIVGSG LKGLGIGSFG LDWSTVAGFL GSPLAVPFFA 300
  301 IANFFGGFFI FLYIVLPIFY WTNAYDAQKF PFYTSHTFDQ TGHTYNITRI LNEKNFDINL 360
  361 DAYNGYSKLY LSVMFALLYG LSFGSLCATI SHVALYDGKF IWGMWKKAKT ATKDKYGDVH 420
  421 SRLMKKNYQS VPQWWFIAVL VISFAFALYA CEGFDKQLQL PWWGLILACA IALFFTLPIG 480
  481 VIQATTNQQM GLNVITELII GYLYPGKPLA NVAFKTYGYI SMSQALYFVG DFKLGHYMKI 540
  541 PPRSMFIVQL VATVVASTVC FGTTWWLITS VENICNVDLL PVGSPWTCPG DEVFYNASII 600
  601 WGVIGPGRMF TKEGIYPGMN WFFLIGLLAP VPFWYLSKKF PEKKWLKQIH VPLIFSAVSA 660
  661 MPQAKAVHYW SWAIVGVVFN YYIFRRFKTW WARHNYILSA ALDAGTAIMG VLIFFAFQNN 720
  721 DISLPDWWGL ENSDHCPLAH CPLAKGVVVE GCPVF