YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCB1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKLISPPL SCPWVTSREV IIKGLPRRRR EWMVTKRNRV SAVTAMIVEP LSVVSSSAIQ  60
   61 IHQWWEQNPN SLLLMTEATG GYSLASYYTS LGLFVISVPG LWSLIKRSVK SKIVRKTFVV 120
  121 NDVKKEPKQV AGEILSFFTR KNFNITDRGE TITFEGKMVP SRGQAALLTF CTCISLASVG 180
  181 LVLTITVPDF GNNWFFIILL SPLAGVYYWK KASRKEEIKV KMMVGSKGRL DEIVVQGDDV 240
  241 QVEEMRKELQ LNEKGMVYVK GLFERSS

Type	Start	End	Confidence
Cytoplasmic	1	39	0.96
Transmembrane Helix	40	62	0.91
Non-Cytoplasmic	63	83	0.93
Transmembrane Helix	84	105	0.94
Cytoplasmic	106	164	0.99
Transmembrane Helix	165	186	0.93
Non-Cytoplasmic	187	193	0.74
Transmembrane Helix	194	209	0.98
Cytoplasmic	210	267	0.96