YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX49_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.95
Transmembrane Helix	39	61	0.82
Non-Cytoplasmic	62	74	0.73
Transmembrane Helix	75	100	0.74
Cytoplasmic	101	112	0.83
Transmembrane Helix	113	136	0.85
Non-Cytoplasmic	137	152	0.88
Transmembrane Helix	153	173	0.82
Cytoplasmic	174	183	0.73
Transmembrane Helix	184	205	0.86
Non-Cytoplasmic	206	216	0.74
Transmembrane Helix	217	240	0.86
Cytoplasmic	241	256	0.87
Transmembrane Helix	257	276	0.87
Non-Cytoplasmic	277	292	0.72
Transmembrane Helix	293	317	0.77
Cytoplasmic	318	334	0.85
Transmembrane Helix	335	358	0.85
Non-Cytoplasmic	359	377	0.75
Transmembrane Helix	378	400	0.75
Cytoplasmic	401	409	0.86
Transmembrane Helix	410	431	0.92
Non-Cytoplasmic	432	438	0.82
Transmembrane Helix	439	459	0.94
Cytoplasmic	460	502	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPLLMIIK NQTDHRQDPN PNPTHLSSSI QEAKSIAKIS LPLILTGLLL YSRSMISMLF  60
   61 LGRLNDLSAL SGGSLALGFA NITGYSLLSG LSIGMEPICV QAFGAKRFKL LGLALQRTTL 120
  121 LLLLCSLPIS ILWLNIKKIL LFFGQDEEIS NQAEIFILFS LPDLILQSFL HPIRIYLRSQ 180
  181 SITLPLTYSA FFAVLLHIPI NYLLVSSLGL GLKGVALGAI WTNVNLLGFL IIYIVFSGVY 240
  241 QKTWGGFSMD CFKGWRSLMK LAIPSCVSVC LEWWWYEIMI LLCGLLLNPQ ATVASMGILI 300
  301 QTTALIYIFP SSLSISVSTR VGNELGANQP DKARIAARTG LSLSLGLGLL AMFFALMVRN 360
  361 CWARLFTDEE EIVKLTSMVL PIIGLCELGN CPQTTLCGVL RGSARPKLGA NINLCCFYFV 420
  421 GMPVAVWLSF FSGFDFKGLW LGLFAAQGSC LISMLVVLAR TDWEVEVHRA KELMTRSCDG 480
  481 DEDDGNTPFL LDSLDIEENL VF