YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TET3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTSNHLIGL VNFLTFLLSI PILGGGIWLS SRANSTDCLR FLQWPLIVIG ISIMVVSLAG  60
   61 FAGACYRNKF LMWLYLVVML LIIAALIGFI IFAYAVTDKG SGRTVLNRGY LDYYLEDYSG 120
  121 WLKDRVSDDS YWGKISSCLR DSGACRKIGR NFNGVPETAD MFFLRRLSPV ESGCCKPPTD 180
  181 CGFSYVNETG WDTRGGMIGP NQDCMVWSND QSMLCYQCSS CKAGVLGSLK KSWRKVSVIN 240
  241 IVVLIILVIF YVIAYAAYRN VKRIDNDEPA GEARMTKSHP SHFHL

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.75
Transmembrane Helix	8	30	0.92
Cytoplasmic	31	40	0.77
Transmembrane Helix	41	64	0.90
Non-Cytoplasmic	65	71	0.70
Transmembrane Helix	72	96	0.91
Cytoplasmic	97	235	0.83
Transmembrane Helix	236	258	0.90
Non-Cytoplasmic	259	285	0.84