YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CP21D_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKIKPQALL NQSKKKKGPS RISISTIIVC NLVVAVVILS LVTTYRHWSQ RSRNTIEHET  60
   61 RSQRFEDTNT ASGQKTYDLP GFADINTSKG LITVELFKEG SPEVVDKFLD LCQKDHFKGM 120
  121 PFQRVIKNYL VQAGHSPSSI PVEEWTAKGK LRGRLHIGPK HEAFMLGTPK NKGNNKDFEL 180
  181 LITTAPIPDL NDQLIVFGRV LKGEDVVQEI EEVDTDEHFQ PKSPIGITGV VLKLET

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.91
Non-Cytoplasmic	44	236	0.98