YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RBL20_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGPSGFHN APVTKAFVIT SALFTVFFGI QGRSSKLGLS YQDIFEKFRI WKLIMSTFAF  60
   61 SSTPELMFGL YLLYYFRVFE RQIGSNKYSV FILFSGTVSL LLEVILLSLL KDTTANLLTS 120
  121 GPYGLIFASF IPFYLDIPVS TRFRVFGVNF SDKSFIYLAG VQLLLSSWKR SIFPGICGII 180
  181 AGSLYRLNIL GIRKAKFPEF VASFFSRLSF PSFGNSPPPA PSRNIVGTIS PNTGRRAERS 240
  241 QPAPLPSSVE PSEEAITTLV SMGFDRNAAR QALVHARNDV NAATNILLEA QSH

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.80
Transmembrane Helix	12	32	0.89
Cytoplasmic	33	50	0.82
Transmembrane Helix	51	74	0.88
Non-Cytoplasmic	75	87	0.81
Transmembrane Helix	88	110	0.89
Cytoplasmic	111	116	0.75
Transmembrane Helix	117	137	0.87
Non-Cytoplasmic	138	170	0.80
Transmembrane Helix	171	189	0.84
Cytoplasmic	190	293	0.87