YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX54_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.69
Transmembrane Helix	30	54	0.70
Non-Cytoplasmic	55	60	0.43
Transmembrane Helix	61	86	0.71
Cytoplasmic	87	103	0.47
Transmembrane Helix	104	128	0.84
Non-Cytoplasmic	129	142	0.45
Transmembrane Helix	143	161	0.46
Cytoplasmic	162	176	0.80
Transmembrane Helix	177	196	0.91
Non-Cytoplasmic	197	204	0.78
Transmembrane Helix	205	227	0.94
Cytoplasmic	228	263	0.85
Transmembrane Helix	264	284	0.81
Non-Cytoplasmic	285	304	0.74
Transmembrane Helix	305	325	0.84
Cytoplasmic	326	342	0.79
Transmembrane Helix	343	366	0.90
Non-Cytoplasmic	367	381	0.82
Transmembrane Helix	382	399	0.75
Cytoplasmic	400	417	0.68
Transmembrane Helix	418	440	0.88
Non-Cytoplasmic	441	446	0.71
Transmembrane Helix	447	468	0.91
Cytoplasmic	469	510	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDKIQSDDF TSHKNPTLPQ VIEELKELWA MVLPITAMNC LVYVRAVVSV LFLGRLGSLE  60
   61 LAGGALSIGF TNITGYSVMV GLASGLEPVC SQAYGSKNWD LLTLSLHRMV VILLMASLPI 120
  121 SLLWINLGPI MLFMGQNPEI TATAAEYCLY ALPDLLTNTL LQPLRVYLRS QRVTKPMMWC 180
  181 TLAAVAFHVP LNYWLVMVKH WGVPGVAIAS VVTNLIMVVL LVGYVWVSGM LQKRVSGDGD 240
  241 GGSTTMVAVV AQSSSVMELV GGLGPLMRVA VPSCLGICLE WWWYEIVIVM GGYLENPKLA 300
  301 VAATGILIQT TSLMYTVPMA LAGCVSARVG NELGAGRPYK ARLAANVALA CAFVVGALNV 360
  361 AWTVILKERW AGLFTGYEPL KVLVASVMPI VGLCELGNCP QTTGCGILRG TGRPAVGAHV 420
  421 NLGSFYFVGT PVAVGLAFWL KIGFSGLWFG LLSAQAACVV SILYAVLART DWEGEAVKAM 480
  481 RLTSLEMRKV GQDEESSLLL LDDEKLGDVL