YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PXN_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDALINGLA GAGGGIIAQL LTYPLQTVNT RQQTERDLKR EKRKLGTIEH MCQVVKQEGW  60
   61 ERLYGGLAPS LAGTAASQGV YYYFYQVFRN RAEATALARK KKGLGDGSVG MFASLLVAAF 120
  121 AGSVNVLMTN PIWVIVTRMQ THRKMTKDQT AAPESPSSNA EALVAVEPRP YGTFNTIREV 180
  181 YDEAGITGFW KGVIPTLIMV SNPSMQFMLY ETMLTKLKKK RALKGSNNVT ALETFLLGAV 240
  241 AKLGATVTTY PLLVVKSRLQ AKQVTTGDKR QQYKGTLDAI LKMIRYEGLY GFYKGMSTKI 300
  301 VQSVLAAAVL FMIKEELVKG AKLLLSNATS S

Type	Start	End	Confidence
Cytoplasmic	1	106	0.49
Transmembrane Helix	107	129	0.80
Non-Cytoplasmic	130	191	0.58
Transmembrane Helix	192	210	0.50
Cytoplasmic	211	331	0.53