YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	U87A2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPNESPPNQ FRHVVAMPYP GRGHINPMMN LCKRLVRRYP NLHVTFVVTE EWLGFIGPDP  60
   61 KPDRIHFSTL PNLIPSELVR AKDFIGFIDA VYTRLEEPFE KLLDSLNSPP PSVIFADTYV 120
  121 IWAVRVGRKR NIPVVSLWTM SATILSFFLH SDLLISHGHA LFEPSEEEVV DYVPGLSPTK 180
  181 LRDLPPIFDG YSDRVFKTAK LCFDELPGAR SLLFTTAYEL EHKAIDAFTS KLDIPVYAIG 240
  241 PLIPFEELSV QNDNKEPNYI QWLEEQPEGS VLYISQGSFL SVSEAQMEEI VKGLRESGVR 300
  301 FLWVARGGEL KLKEALEGSL GVVVSWCDQL RVLCHKAVGG FWTHCGFNST LEGIYSGVPM 360
  361 LAFPLFWDQI LNAKMIVEDW RVGMRIERTK KNELLIGREE IKEVVKRFMD RESEEGKEMR 420
  421 RRACDLSEIS RGAVAKSGSS NVNIDEFVRH ITNTN

Type	Start	End	Confidence
Cytoplasmic	1	133	0.69
Transmembrane Helix	134	154	0.64
Non-Cytoplasmic	155	455	0.98