YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PNSB5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVTILSPK SIPKVTDSKF GARVSDQIVN VVKCGKSGRR LKLAKLVSAA GLSQIEPDIN  60
   61 EDPIGQFETN SIEMEDFKYG YYDGAHTYYE GEVQKGTFWG AIADDIAAVD QTNGFQGLIS 120
  121 CMFLPAIALG MYFDAPGEYL FIGAALFTVV FCIIEMDKPD QPHNFEPQIY KLERGARDKL 180
  181 INDYNTMSIW DFNDKYGDVW DFTIEKDDIA TR

Type	Start	End	Confidence
Cytoplasmic	1	111	0.66
Transmembrane Helix	112	132	0.56
Non-Cytoplasmic	133	138	0.73
Transmembrane Helix	139	156	0.61
Cytoplasmic	157	212	0.60