YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HHP3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRRSAKKS PAMVTVTDWK GLDCGEETRI VRRLMKFEDL PEYLKDNEFI HNHYRCQWSL  60
   61 KDTFLSAFSW HNETLNIWTH LIGFGIFLWM TVVSCLETTE ISLAGVFNGM AGVRICLSSN 120
  121 QTLLHDSNVT HHISCLTSQG EAIPKWPWLV YLVGAMGCLI CSSVSHLLAC HSKRFNVFFW 180
  181 RLDYAGISLM IVASFFAPIY YAFSCHPNFR LLYLSSISIL GLLAIITLLS PALSTPRFRP 240
  241 FRANLFLAMG SSAVIPATHV LCLYWDHPNV FIALGYEIAT ALSYFVGATF YVSRVPERWK 300
  301 PGAFDMAGHS HQIFHVFVVM GALAHCVTTL LIIDFSRASP SCGF

Type	Start	End	Confidence
Cytoplasmic	1	76	0.88
Transmembrane Helix	77	99	0.84
Non-Cytoplasmic	100	147	0.90
Transmembrane Helix	148	170	0.93
Cytoplasmic	171	179	0.89
Transmembrane Helix	180	202	0.90
Non-Cytoplasmic	203	210	0.83
Transmembrane Helix	211	233	0.91
Cytoplasmic	234	242	0.86
Transmembrane Helix	243	263	0.94
Non-Cytoplasmic	264	271	0.79
Transmembrane Helix	272	292	0.94
Cytoplasmic	293	312	0.91
Transmembrane Helix	313	333	0.96
Non-Cytoplasmic	334	344	0.87