YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARAE1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP  60
   61 SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV DNLSRGNLAA VRILQELFPE 120
  121 PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL 180
  181 ETMAAHGVKT LIYSSTCATY GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM 240
  241 AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG 300
  301 TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY 360
  361 LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR WQKLHRNGYG LTTSSVSVY

Type	Start	End	Confidence
Cytoplasmic	1	32	0.67
Transmembrane Helix	33	51	0.62
Non-Cytoplasmic	52	419	0.80