YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSRA5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISLKRNRF FIPYTNLVFF FFLCVSLLDK TVSIRISNQI SDTVVDSPDR PLKSAVFALG  60
   61 SFWRSEAAFG CINGVVRTSA GYAGGTKTNP EYRNLGDHAE SVQVEYDPRI IGYRQLLDVF 120
  121 WSSHDSRQVF GQGPDVGNQY RSCIFTNSTE ELRLASTSKE REQLNTRSSI VTTQIQQLGT 180
  181 FYRAEPDHQK FELKQHPFLI QLIGNMVEEE LERSALATKL NGYAAELCPP RIQKHIDSRV 240
  241 NEIIRKGWPV LRDI

Type	Start	End	Confidence
Cytoplasmic	1	9	0.75
Transmembrane Helix	10	29	0.74
Non-Cytoplasmic	30	254	0.97