YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GONS3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.73
Transmembrane Helix	33	57	0.82
Non-Cytoplasmic	58	63	0.62
Transmembrane Helix	64	87	0.81
Cytoplasmic	88	94	0.67
Transmembrane Helix	95	118	0.81
Non-Cytoplasmic	119	125	0.59
Transmembrane Helix	126	145	0.89
Cytoplasmic	146	151	0.60
Transmembrane Helix	152	171	0.82
Non-Cytoplasmic	172	177	0.54
Transmembrane Helix	178	197	0.82
Cytoplasmic	198	204	0.54
Transmembrane Helix	205	225	0.69
Non-Cytoplasmic	226	248	0.76
Transmembrane Helix	249	270	0.91
Cytoplasmic	271	277	0.70
Transmembrane Helix	278	299	0.85
Non-Cytoplasmic	300	304	0.70
Transmembrane Helix	305	323	0.92
Cytoplasmic	324	372	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNDEENGT VIEVKNVPEP SPETWYSVFL RQASVYGVAA GYCLSASLLS IINKWAIMKF  60
   61 PYPGALTAMQ YFTSAAGVLL CAQMKLIEHD SLNLLTMWRF LPAAMIFYLS LFTNSELLLH 120
  121 ANVDTFIVFR SAVPIFVAIG ETLFLHQPWP SVKTWGSLAT IFGGSLLYVF TDYQFTIAAY 180
  181 SWALAYLVSM TIDFVYIKHV VMTIGLNTWG LVLYNNLEAL LLFPLELLIM GELKKIKHEI 240
  241 TDETDWYSLQ VVLPVGLSCL FGLAISFFGF SCRRAISATG FTVLGIVNKL LTVVINLMVW 300
  301 DKHSTFVGTL GLLVCMFGGV MYQQSTIKKP NATQEAKPQE QDEEQEKLLE MQENKESNSV 360
  361 DIKETLKSEE KL