YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.95
Transmembrane Helix	33	55	0.86
Non-Cytoplasmic	56	60	0.73
Transmembrane Helix	61	83	0.86
Cytoplasmic	84	152	0.89
Transmembrane Helix	153	170	0.80
Non-Cytoplasmic	171	175	0.65
Transmembrane Helix	176	197	0.86
Cytoplasmic	198	262	0.86
Transmembrane Helix	263	285	0.92
Non-Cytoplasmic	286	300	0.94
Transmembrane Helix	301	327	0.78
Cytoplasmic	328	347	0.89
Transmembrane Helix	348	370	0.85
Non-Cytoplasmic	371	374	0.56
Transmembrane Helix	375	395	0.76
Cytoplasmic	396	404	0.72
Transmembrane Helix	405	427	0.88
Non-Cytoplasmic	428	441	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSEMSASE VAAAKQKNVD DWLPITSSRN AKWWYSAFHN VTAMVGAGVL SLPYAMSNLG  60
   61 WGPGVTIMVM SWIITLYTLW QMVEMHEIVP GKRLDRYHEL GQHAFGEKLG LWIVVPQQLI 120
  121 VEVGVDIVYM VTGGASLKKV HQLVCPDCKE IRTTFWIMIF ASVHFVISHL PNFNSISIIS 180
  181 LAAAVMSLTY STIAWAASVH KGVHPDVDYS PRASTDVGKV FNFLNALGDV AFAYAGHNVV 240
  241 LEIQATIPST PEMPSKVPMW RGVIVAYIVV AICYFPVAFL GYYIFGNSVD DNILITLEKP 300
  301 IWLIAMANMF VVIHVIGSYQ IFAMPVFDML ETVLVKKMNF NPSFKLRFIT RSLYVAFTMI 360
  361 VAICVPFFGG LLGFFGGFAF APTTYYLPCI MWLVLKKPKR FGLSWTANWF CIIVGVLLTI 420
  421 LAPIGGLRTI IINAKTYKFF S