YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RHL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRASSSKKG GSKGGDKDDA ESKQRKRLKT LALDNQLLSD SPAKSHSSLK PSKQVLKHHG  60
   61 TDIIRKSQRK NRFLFSFPGL LAPISAATIG DLDRLSTKNP VLYLNFPQGR MKLFGTILYP 120
  121 KNRYLTLQFS RGGKNVLCDD YFDNMIVFSE SWWIGTKEEN PEEARLDFPK ELAQAENTEF 180
  181 DFQGGAGGAA SVKKLASPEI GSQPTETDSP EVDNEDVLSE DGEFLDDKIQ VTPPVQLTPP 240
  241 VQVTPVRQSQ RNSGKKFNFA ETSSEASSGE SEGNTSDEDE KPLLEPESST RSREESQDGN 300
  301 GITASASKLP EELPAKREKL KSKDSKLVQA TLSNLFKKAE EKTAGTSKAK SSSKA

Type	Start	End	Confidence
Cytoplasmic	1	72	0.57
Transmembrane Helix	73	90	0.56
Non-Cytoplasmic	91	355	0.99