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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CKI1_ARATH
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVKVTKLVA SRPIVVFCVL AFLVVVFECI WISNWRTTTE NLVKEVASFT EDLRTSLVSE  60
   61 IENIGKFTYA KTNLSTIGLA RVIDSYITNN DTGFTEIQTQ IAPLLFVAYS TILQVSQVSY 120
  121 ISRDGLMFSY IAESNTSVAV FANSSSNSSR GDYTWYTQTV DQLTGRLNGN STKSQSLDVT 180
  181 HTDWFQAAQS NNYTTAFVGT SLGGEDNETL IQSVVSLYSK KGLVSLGFPV KTLTEVLNSL 240
  241 NLHGEELYMW TKDGTVLVRE GSLNDSFFIS NGSICFGRES NSLWSQCIPE NCSSSGYEVE 300
  301 IKRLRYQAFC SVIEVSGVPL RYTLMFPNKG GATRIKHQAE KAKYQLIVVM IFLGFGWPVW 360
  361 FVWFMMQATR REMHMRATLI NQMEATQQAE RKSMNKSQAF ANASHDIRGA LAGMKGLIDI 420
  421 CRDGVKPGSD VDTTLNQVNV CAKDLVALLN SVLDMSKIES GKMQLVEEDF NLSKLLEDVI 480
  481 DFYHPVAMKK GVDVVLDPHD GSVFKFSNVR GDSGRLKQIL NNLVSNAVKF TVDGHIAVRA 540
  541 WAQRPGSNSS VVLASYPKGV SKFVKSMFCK NKEESSTYET EISNSIRNNA NTMEFVFEVD 600
  601 DTGKGIPMEM RKSVFENYVQ VRETAQGHQG TGLGLGIVQS LVRLMGGEIR ITDKAMGEKG 660
  661 TCFQFNVLLT TLESPPVSDM KVRQEIEAGG DYVSTPNLGL TINTSLGGSM NIRNLSPRFN 720
  721 NCLSSSPKQE GSRVVLLLKN EERRRVTEKY IKNLGIKVTV VEKWEHLSYA LERLFGFSPQ 780
  781 SSMGRAECSL SCPSSRELPF IGMDGIDSRS QLPKRRSISF SAVVLLVIDA KTGPFFELCD 840
  841 IVKQFRRGLP HGISCKVVWL NESSTRVSER GDISCSRPLH GSRLMEVLKM LPEFGGTVLK 900
  901 EPPTELQRES LLRHSFVAER SPKHKVQEEG PSSMFNKKLG KRIMASTDSE SETRVKSVRT 960
  961 GRKPIGNPED EQETSKPSDD EFLRGKRVLV VDDNFISRKV ATGKLKKMGV SEVEQCDSGK1020
 1021 EALRLVTEGL TQREEQGSVD KLPFDYIFMD CQMPEMDGYE ATREIRKVEK SYGVRTPIIA1080
 1081 VSGHDPGSEE ARETIQAGMD AFLDKSLNQL ANVIREIESK RH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle