YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AAP6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.89
Transmembrane Helix	40	61	0.87
Non-Cytoplasmic	62	124	0.48
Transmembrane Helix	125	146	0.56
Cytoplasmic	147	160	0.78
Transmembrane Helix	161	180	0.87
Non-Cytoplasmic	181	189	0.69
Transmembrane Helix	190	212	0.90
Cytoplasmic	213	282	0.91
Transmembrane Helix	283	304	0.95
Non-Cytoplasmic	305	321	0.94
Transmembrane Helix	322	344	0.88
Cytoplasmic	345	385	0.95
Transmembrane Helix	386	406	0.83
Non-Cytoplasmic	407	409	0.62
Transmembrane Helix	410	432	0.68
Cytoplasmic	433	447	0.59
Transmembrane Helix	448	469	0.89
Non-Cytoplasmic	470	481	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKKSMFVE QSFPEHEIGD TNKNFDEDGR DKRTGTWMTG SAHIITAVIG SGVLSLAWAI  60
   61 AQLGWVAGPA VLMAFSFITY FTSTMLADCY RSPDPVTGKR NYTYMEVVRS YLGGRKVQLC 120
  121 GLAQYGNLIG ITIGYTITAS ISMVAVKRSN CFHKNGHNVK CATSNTPFMI IFAIIQIILS 180
  181 QIPNFHNLSW LSILAAVMSF CYASIGVGLS IAKAAGGGEH VRTTLTGVTV GIDVSGAEKI 240
  241 WRTFQAIGDI AFAYAYSTVL IEIQDTLKAG PPSENKAMKR ASLVGVSTTT FFYMLCGCVG 300
  301 YAAFGNDAPG NFLTGFGFYE PFWLIDFANV CIAVHLIGAY QVFCQPIFQF VESQSAKRWP 360
  361 DNKFITGEYK IHVPCCGDFS INFLRLVWRT SYVVVTAVVA MIFPFFNDFL GLIGAASFWP 420
  421 LTVYFPIEMH IAQKKIPKFS FTWTWLKILS WTCFIVSLVA AAGSVQGLIQ SLKDFKPFQA 480
  481 P