YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DDPS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLLSSDSS LLSLLFLFLI PCLFITSYIG FPVFLLKLIG LIKIKAARDN EKRDEGTYVV  60
   61 REDGLQRELM PRHVAFILDG NRRWAKRAGL TTSQGHEAGA KRLIDIAELC FELGVHTVSA 120
  121 FAFSTENWGR DKIEIDNLMS LIQHYRNKSN IKFFHRSEVR VSVIGNKTKI PESLLKEIHE 180
  181 IEEATKGYKN KHLIMAVDYS GKFDIMHACK SLVKKSEKGL IREEDVDEAL IERELLTNCS 240
  241 DFPSPDLMIR TSGEQRISNF FLWQLAYSEL FFSPVFWPDF DKDKLLEALA SYQRRERRFG 300
  301 CRV

Type	Start	End	Confidence
Cytoplasmic	1	10	0.29
Transmembrane Helix	11	31	0.54
Non-Cytoplasmic	32	303	0.71