YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB5C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.52
Transmembrane Helix	16	43	0.77
Cytoplasmic	44	73	0.52
Transmembrane Helix	74	96	0.86
Non-Cytoplasmic	97	109	0.49
Transmembrane Helix	110	133	0.87
Cytoplasmic	134	142	0.49
Transmembrane Helix	143	164	0.88
Non-Cytoplasmic	165	177	0.48
Transmembrane Helix	178	200	0.87
Cytoplasmic	201	306	0.77
Transmembrane Helix	307	328	0.77
Non-Cytoplasmic	329	344	0.72
Transmembrane Helix	345	359	0.39
Cytoplasmic	360	420	0.56
Transmembrane Helix	421	441	0.64
Non-Cytoplasmic	442	445	0.47
Transmembrane Helix	446	466	0.82
Cytoplasmic	467	523	0.84
Transmembrane Helix	524	547	0.78
Non-Cytoplasmic	548	550	0.54
Transmembrane Helix	551	572	0.82
Cytoplasmic	573	941	0.99
Transmembrane Helix	942	962	0.89
Non-Cytoplasmic	963	994	0.87
Transmembrane Helix	995	1018	0.80
Cytoplasmic	1019	1064	0.84
Transmembrane Helix	1065	1082	0.63
Non-Cytoplasmic	1083	1084	0.44
Transmembrane Helix	1085	1107	0.76
Cytoplasmic	1108	1178	0.54
Transmembrane Helix	1179	1200	0.77
Non-Cytoplasmic	1201	1514	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFIEISLIF REHLPLLELC SVIINLLLFL VFLFAVSARQ ILVCVRRGRD RLSKDDTVSA  60
   61 SNLSLEREVN HVSVGFGFNL SLLCCLYVLG VQVLVLVYDG VKVRREVSDW FVLCFPASQS 120
  121 LAWFVLSFLV LHLKYKSSEK LPFLVRIWWF LAFSICLCTM YVDGRRLAIE GWSRCSSHVV 180
  181 ANLAVTPALG FLCFLAWRGV SGIQVTRSSS DLQEPLLVEE EAACLKVTPY STAGLVSLIT 240
  241 LSWLDPLLSA GSKRPLELKD IPLLAPRDRA KSSYKVLKSN WKRCKSENPS KPPSLARAIM 300
  301 KSFWKEAACN AVFAGLNTLV SYVGPYLISY FVDYLGGKEI FPHEGYVLAG IFFTSKLIET 360
  361 VTTRQWYMGV DILGMHVRSA LTAMVYRKGL KLSSIAKQNH TSGEIVNYMA VDVQRIGDYS 420
  421 WYLHDIWMLP MQIVLALAIL YKSVGIAAVA TLVATIISIL VTIPLAKVQE DYQDKLMTAK 480
  481 DERMRKTSEC LRNMRVLKLQ AWEDRYRVRL EEMREEEYGW LRKALYSQAF VTFIFWSSPI 540
  541 FVAAVTFATS IFLGTQLTAG GVLSALATFR ILQEPLRNFP DLVSMMAQTK VSLDRISGFL 600
  601 QEEELQEDAT VVIPRGLSNI AIEIKDGVFC WDPFSSRPTL SGIQMKVEKG MRVAVCGTVG 660
  661 SGKSSFISCI LGEIPKISGE VRICGTTGYV SQSAWIQSGN IEENILFGSP MEKTKYKNVI 720
  721 QACSLKKDIE LFSHGDQTII GERGINLSGG QKQRVQLARA LYQDADIYLL DDPFSALDAH 780
  781 TGSDLFRDYI LSALAEKTVV FVTHQVEFLP AADLILVLKE GRIIQSGKYD DLLQAGTDFK 840
  841 ALVSAHHEAI EAMDIPSPSS EDSDENPIRD SLVLHNPKSD VFENDIETLA KEVQEGGSAS 900
  901 DLKAIKEKKK KAKRSRKKQL VQEEERVKGK VSMKVYLSYM GAAYKGALIP LIILAQAAFQ 960
  961 FLQIASNWWM AWANPQTEGD ESKVDPTLLL IVYTALAFGS SVFIFVRAAL VATFGLAAAQ1020
 1021 KLFLNMLRSV FRAPMSFFDS TPAGRILNRV SIDQSVVDLD IPFRLGGFAS TTIQLCGIVA1080
 1081 VMTNVTWQVF LLVVPVAVAC FWMQKYYMAS SRELVRIVSI QKSPIIHLFG ESIAGAATIR1140
 1141 GFGQEKRFIK RNLYLLDCFV RPFFCSIAAI EWLCLRMELL STLVFAFCMV LLVSFPHGTI1200
 1201 DPSMAGLAVT YGLNLNGRLS RWILSFCKLE NKIISIERIY QYSQIVGEAP AIIEDFRPPS1260
 1261 SWPATGTIEL VDVKVRYAEN LPTVLHGVSC VFPGGKKIGI VGRTGSGKST LIQALFRLIE1320
 1321 PTAGKITIDN IDISQIGLHD LRSRLGIIPQ DPTLFEGTIR ANLDPLEEHS DDKIWEALDK1380
 1381 SQLGDVVRGK DLKLDSPVLE NGDNWSVGQR QLVSLGRALL KQAKILVLDE ATASVDTATD1440
 1441 NLIQKIIRTE FEDCTVCTIA HRIPTVIDSD LVLVLSDGRV AEFDTPARLL EDKSSMFLKL1500
 1501 VTEYSSRSTG IPEL