YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUMP2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADFKPRIEI SFLETFICSA FAACFAELCT IPLDTAKVRL QLQRKIPTGD GENLPKYRGS  60
   61 IGTLATIARE EGISGLWKGV IAGLHRQCIY GGLRIGLYEP VKTLLVGSDF IGDIPLYQKI 120
  121 LAALLTGAIA IIVANPTDLV KVRLQSEGKL PAGVPRRYAG AVDAYFTIVK LEGVSALWTG 180
  181 LGPNIARNAI VNAAELASYD QIKETIMKIP FFRDSVLTHL LAGLAAGFFA VCIGSPIDVV 240
  241 KSRMMGDSTY RNTVDCFIKT MKTEGIMAFY KGFLPNFTRL GTWNAIMFLT LEQVKKVFLR 300
  301 EVLYD

Type	Start	End	Confidence
Cytoplasmic	1	11	0.48
Transmembrane Helix	12	27	0.44
Non-Cytoplasmic	28	215	0.63
Transmembrane Helix	216	239	0.81
Cytoplasmic	240	305	0.59