YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PROT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.79
Transmembrane Helix	36	55	0.81
Non-Cytoplasmic	56	62	0.51
Transmembrane Helix	63	87	0.85
Cytoplasmic	88	118	0.60
Transmembrane Helix	119	144	0.81
Non-Cytoplasmic	145	153	0.50
Transmembrane Helix	154	172	0.95
Cytoplasmic	173	178	0.42
Transmembrane Helix	179	201	0.88
Non-Cytoplasmic	202	221	0.53
Transmembrane Helix	222	241	0.68
Cytoplasmic	242	259	0.81
Transmembrane Helix	260	282	0.93
Non-Cytoplasmic	283	301	0.76
Transmembrane Helix	302	321	0.86
Cytoplasmic	322	342	0.86
Transmembrane Helix	343	364	0.83
Non-Cytoplasmic	365	371	0.64
Transmembrane Helix	372	392	0.89
Cytoplasmic	393	405	0.93
Transmembrane Helix	406	430	0.89
Non-Cytoplasmic	431	442	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATEAKNRK INVGDGDDVV DIEIPDTAHQ ISSDSWFQVA FVLTTGINSA YVLGYSGTIM  60
   61 VPLGWIGGVV GLLIATAISL YANTLIAKLH EFGGRRHIRY RDLAGFIYGR KAYHLTWGLQ 120
  121 YVNLFMINCG FIILAGSALK AVYVLFRDDH TMKLPHFIAI AGLICAIFAI GIPHLSALGV 180
  181 WLGVSTFLSL IYIVVAIVLS VRDGVKTPSR DYEIQGSSLS KLFTITGAAA NLVFAFNTGM 240
  241 LPEIQATVRQ PVVKNMMKAL YFQFTAGVLP MYAVTFIGYW AYGSSTSTYL LNSVNGPLWV 300
  301 KALANVSAIL QSVISLHIFA SPTYEYMDTK YGIKGNPFAI KNLLFRIMAR GGYIAVSTLI 360
  361 SALLPFLGDF MSLTGAVSTF PLTFILANHM YYKAKNNKLN AMQKLWHWLN VVFFSLMSVA 420
  421 AAIAAVRLIA VDSKNFHVFA DL