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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CSLD3_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNNHFMNS RSNLSTNSDA AEAERHQQPV SNSVTFARRT PSGRYVNYSR DDLDSELGSV  60
   61 DLTGYSVHIP PTPDNQPMDP SISQKVEEQY VSNSLFTGGF NSVTRAHLME KVIDTETSHP 120
  121 QMAGAKGSSC AVPGCDVKVM SDERGQDLLP CECDFKICRD CFMDAVKTGG MCPGCKEPYR 180
  181 NTDLADFADN NKQQRPMLPP PAGGSKMDRR LSLMKSTKSG LMRSQTGDFD HNRWLFETSG 240
  241 TYGFGNAFWT KDGNFGSDKD GNGHGMGPQD LMSRPWRPLT RKLQIPAAVI SPYRLLILIR 300
  301 IVVLALFLMW RIKHKNPDAI WLWGMSVVCE LWFALSWLLD QLPKLCPINR ATDLNVLKEK 360
  361 FETPTPSNPT GKSDLPGLDM FVSTADPEKE PPLVTSNTIL SILAADYPVE KLACYVSDDG 420
  421 GALLTFEAMA EAASFANMWV PFCRKHNIEP RNPDSYFSLK RDPYKNKVKA DFVKDRRRVK 480
  481 REYDEFKVRI NSLPDSIRRR SDAYHAREEI KAMKLQRQNR DEEIVEPVKI PKATWMADGT 540
  541 HWPGTWINSG PDHSRSDHAG IIQVMLKPPS DEPLHGVSEG FLDLTDVDIR LPLLVYVSRE 600
  601 KRPGYDHNKK AGAMNALVRA SAIMSNGPFI LNLDCDHYIY NSQALREGMC FMMDRGGDRL 660
  661 CYVQFPQRFE GIDPSDRYAN HNTVFFDVNM RALDGLMGPV YVGTGCLFRR IALYGFDPPR 720
  721 AKEHHPGFCS CCFSRKKKKS RVPEENRSLR MGGDSDDDEE MNLSLVPKKF GNSTFLIDSI 780
  781 PVAEFQGRPL ADHPAVQNGR PPGALTIPRE LLDASTVAEA IAVISCWYED KTEWGSRIGW 840
  841 IYGSVTEDVV TGYRMHNRGW KSVYCVTKRD AFRGTAPINL TDRLHQVLRW ATGSVEIFFS 900
  901 RNNAFFASPR MKILQRIAYL NVGIYPFTSF FLIVYCFLPA LSLFSGQFIV QTLNVTFLVY 960
  961 LLIISITLCL LALLEIKWSG ISLEEWWRNE QFWLIGGTSA HLAAVIQGLL KVVAGIEISF1020
 1021 TLTSKSGGED VDDEFADLYI VKWTSLMIPP ITIMMVNLIA IAVGFSRTIY SVIPQWSKLI1080
 1081 GGVFFSFWVL AHLYPFAKGL MGRRGRTPTI VYVWSGLVAI TISLLWVAIN PPAGSTQIGG1140
 1141 SFTFP

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Created and Maintained by: Michael Riffle