YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HACL_ARATH
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKSETTPP SIDGNVLVAK SLSHLGVTHM FGVVGIPVTS LASRAMALGI RFIAFHNEQS  60
   61 AGYAASAYGY LTGKPGILLT VSGPGCVHGL AGLSNAWVNT WPMVMISGSC DQRDVGRGDF 120
  121 QELDQIEAVK AFSKLSEKAK DVREIPDCVS RVLDRAVSGR PGGCYLDIPT DVLRQKISES 180
  181 EADKLVDEVE RSRKEEPIRG SLRSEIESAV SLLRKAERPL IVFGKGAAYS RAEDELKKLV 240
  241 EITGIPFLPT PMGKGLLPDT HEFSATAARS LAIGKCDVAL VVGARLNWLL HFGESPKWDK 300
  301 DVKFILVDVS EEEIELRKPH LGIVGDAKTV IGLLNREIKD DPFCLGKSNS WVESISKKAK 360
  361 ENGEKMEIQL AKDVVPFNFL TPMRIIRDAI LAVEGPSPVV VSEGANTMDV GRSVLVQKEP 420
  421 RTRLDAGTWG TMGVGLGYCI AAAVASPDRL VVAVEGDSGF GFSAMEVETL VRYNLAVVII 480
  481 VFNNGGVYGG DRRGPEEISG PHKEDPAPTS FVPNAGYHKL IEAFGGKGYI VETPDELKSA 540
  541 LAESFAARKP AVVNVIIDPF AGAESGRLQH KN

Type	Start	End	Confidence
Cytoplasmic	1	24	0.57
Transmembrane Helix	25	48	0.63
Non-Cytoplasmic	49	76	0.69
Transmembrane Helix	77	98	0.47
Cytoplasmic	99	426	0.51
Transmembrane Helix	427	445	0.42
Non-Cytoplasmic	446	572	0.63