YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLAC1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	184	0.99
Transmembrane Helix	185	209	0.88
Non-Cytoplasmic	210	225	0.84
Transmembrane Helix	226	245	0.94
Cytoplasmic	246	263	0.80
Transmembrane Helix	264	285	0.89
Non-Cytoplasmic	286	292	0.79
Transmembrane Helix	293	312	0.92
Cytoplasmic	313	328	0.85
Transmembrane Helix	329	348	0.77
Non-Cytoplasmic	349	355	0.65
Transmembrane Helix	356	376	0.88
Cytoplasmic	377	385	0.79
Transmembrane Helix	386	408	0.86
Non-Cytoplasmic	409	416	0.61
Transmembrane Helix	417	436	0.92
Cytoplasmic	437	443	0.67
Transmembrane Helix	444	463	0.75
Non-Cytoplasmic	464	472	0.58
Transmembrane Helix	473	500	0.81
Cytoplasmic	501	556	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERKQSNAHS TFADINEVED EAEQELQQQE NNNNKRFSGN RGPNRGKQRP FRGFSRQVSL  60
   61 ETGFSVLNRE SRERDDKKSL PRSGRSFGGF ESGGIINGGD GRKTDFSMFR TKSTLSKQKS 120
  121 LLPSIIRERD IENSLRTEDG ETKDDSINEN VSAGRYFAAL RGPELDEVKD NEDILLPKEE 180
  181 QWPFLLRFPI GCFGICLGLS SQAVLWLALA KSPATNFLHI TPLINLVVWL FSLVVLVSVS 240
  241 FTYILKCIFY FEAVKREYFH PVRVNFFFAP WVVCMFLAIS VPPMFSPNRK YLHPAIWCVF 300
  301 MGPYFFLELK IYGQWLSGGK RRLCKVANPS SHLSVVGNFV GAILASKVGW DEVAKFLWAV 360
  361 GFAHYLVVFV TLYQRLPTSE ALPKELHPVY SMFIAAPSAA SIAWNTIYGQ FDGCSRTCFF 420
  421 IALFLYISLV ARINFFTGFK FSVAWWSYTF PMTTASVATI KYAEAVPGYP SRALALTLSF 480
  481 ISTAMVCVLF VSTLLHAFVW QTLFPNDLAI AITKRKLTRE KKPFKRAYDL KRWTKQALAK 540
  541 KISAEKDFEA EEESHH