YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3522949, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRNLRNAIV AFLAPLPSIV FYLTFLSNYS SSSDSELSSI QSWCLNHPLL LANLLFFLNV  60
   61 NVLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLSQY NKLRSMIVIT LTWIWSIRLT 120
  121 HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID 180
  181 EPLNIWDFIS SAICLTGIVM AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP 240
  241 NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ 300
  301 KTTSVWIPWF KSHAAATKDK NT

Type	Start	End	Confidence
Cytoplasmic	1	7	0.66
Transmembrane Helix	8	26	0.94
Non-Cytoplasmic	27	46	0.60
Transmembrane Helix	47	69	0.87
Cytoplasmic	70	76	0.55
Transmembrane Helix	77	94	0.85
Non-Cytoplasmic	95	154	0.62
Transmembrane Helix	155	176	0.90
Cytoplasmic	177	184	0.67
Transmembrane Helix	185	204	0.91
Non-Cytoplasmic	205	258	0.84
Transmembrane Helix	259	282	0.88
Cytoplasmic	283	322	0.96